Zhenyi Shen, Hanqi Yan, Linhai Zhang, Zhanghao Hu, Yali Du, Yulan He
Chain-of-Thought (CoT) reasoning enhances Large Language Models (LLMs) by encouraging step-by-step reasoning in natural language. However, leveraging a latent continuous space for reasoning may offer benefits in terms of both efficiency and robustness. Prior implicit CoT methods attempt to bypass language completely by reasoning in continuous space but have consistently underperformed compared to the standard explicit CoT approach. We introduce CODI (Continuous Chain-of-Thought via Self-Distillation), a novel training framework that effectively compresses natural language CoT into continuous space. CODI jointly trains a teacher task (Explicit CoT) and a student task (Implicit CoT), distilling the reasoning ability from language into continuous space by aligning the hidden states of a designated token. Our experiments show that CODI is the first implicit CoT approach to match the performance of explicit CoT on GSM8k at the GPT-2 scale, achieving a 3.1x compression rate and outperforming the previous state-of-the-art by 28.2% in accuracy. CODI also demonstrates robustness, generalizable to complex datasets, and interpretability. These results validate that LLMs can reason effectively not only in natural language, but also in a latent continuous space. Code is available at https://github.com/zhenyi4/codi.
M. Arana-Catania, Rob Procter, Yulan He, Maria Liakata
We present work on summarising deliberative processes for non-English languages. Unlike commonly studied datasets, such as news articles, this deliberation dataset reflects difficulties of combining multiple narratives, mostly of poor grammatical quality, in a single text. We report an extensive evaluation of a wide range of abstractive summarisation models in combination with an off-the-shelf machine translation model. Texts are translated into English, summarised, and translated back to the original language. We obtain promising results regarding the fluency, consistency and relevance of the summaries produced. Our approach is easy to implement for many languages for production purposes by simply changing the translation model.
Shuzheng Gao, Cuiyun Gao, Yulan He, Jichuan Zeng, Lun Yiu Nie, Xin Xia, Michael R. Lyu
Code summaries help developers comprehend programs and reduce their time to infer the program functionalities during software maintenance. Recent efforts resort to deep learning techniques such as sequence-to-sequence models for generating accurate code summaries, among which Transformer-based approaches have achieved promising performance. However, effectively integrating the code structure information into the Transformer is under-explored in this task domain. In this paper, we propose a novel approach named SG-Trans to incorporate code structural properties into Transformer. Specifically, we inject the local symbolic information (e.g., code tokens and statements) and global syntactic structure (e.g., data flow graph) into the self-attention module of Transformer as inductive bias. To further capture the hierarchical characteristics of code, the local information and global structure are designed to distribute in the attention heads of lower layers and high layers of Transformer. Extensive evaluation shows the superior performance of SG-Trans over the state-of-the-art approaches. Compared with the best-performing baseline, SG-Trans still improves 1.4% and 2.0% in terms of METEOR score, a metric widely used for measuring generation quality, respectively on two benchmark datasets.
Rilwan A. Adewoyin, Ritabrata Dutta, Yulan He
In this paper, we study the task of improving the cohesion and coherence of long-form text generated by language models. To this end, we propose RSTGen, a framework that utilises Rhetorical Structure Theory (RST), a classical language theory, to control the discourse structure, semantics and topics of generated text. Firstly, we demonstrate our model's ability to control structural discourse and semantic features of generated text in open generation evaluation. Then we experiment on the two challenging long-form text tasks of argument generation and story generation. Evaluation using automated metrics and a metric with high correlation to human evaluation, shows that our model performs competitively against existing models, while offering significantly more controls over generated text than alternative methods.
Junru Lu, Xingwei Tan, Gabriele Pergola, Lin Gui, Yulan He
Human reading comprehension often requires reasoning of event semantic relations in narratives, represented by Event-centric Question-Answering (QA). To address event-centric QA, we propose a novel QA model with contrastive learning and invertible event transformation, call TranCLR. Our proposed model utilizes an invertible transformation matrix to project semantic vectors of events into a common event embedding space, trained with contrastive learning, and thus naturally inject event semantic knowledge into mainstream QA pipelines. The transformation matrix is fine-tuned with the annotated event relation types between events that occurred in questions and those in answers, using event-aware question vectors. Experimental results on the Event Semantic Relation Reasoning (ESTER) dataset show significant improvements in both generative and extractive settings compared to the existing strong baselines, achieving over 8.4% gain in the token-level F1 score and 3.0% gain in Exact Match (EM) score under the multi-answer setting. Qualitative analysis reveals the high quality of the generated answers by TranCLR, demonstrating the feasibility of injecting event knowledge into QA model learning. Our code and models can be found at https://github.com/LuJunru/TranCLR.
Xingwei Tan, Yuxiang Zhou, Gabriele Pergola, Yulan He
Event temporal graphs have been shown as convenient and effective representations of complex temporal relations between events in text. Recent studies, which employ pre-trained language models to auto-regressively generate linearised graphs for constructing event temporal graphs, have shown promising results. However, these methods have often led to suboptimal graph generation as the linearised graphs exhibit set characteristics which are instead treated sequentially by language models. This discrepancy stems from the conventional text generation objectives, leading to erroneous penalisation of correct predictions caused by the misalignment of elements in target sequences. To address these challenges, we reframe the task as a conditional set generation problem, proposing a Set-aligning Framework tailored for the effective utilisation of Large Language Models (LLMs). The framework incorporates data augmentations and set-property regularisations designed to alleviate text generation loss penalties associated with the linearised graph edge sequences, thus encouraging the generation of more relation edges. Experimental results show that our framework surpasses existing baselines for event temporal graph generation. Furthermore, under zero-shot settings, the structural knowledge introduced through our framework notably improves model generalisation, particularly when the training examples available are limited.
Junru Lu, Jiazheng Li, Byron C. Wallace, Yulan He, Gabriele Pergola
Accessing medical literature is difficult for laypeople as the content is written for specialists and contains medical jargon. Automated text simplification methods offer a potential means to address this issue. In this work, we propose a summarize-then-simplify two-stage strategy, which we call NapSS, identifying the relevant content to simplify while ensuring that the original narrative flow is preserved. In this approach, we first generate reference summaries via sentence matching between the original and the simplified abstracts. These summaries are then used to train an extractive summarizer, learning the most relevant content to be simplified. Then, to ensure the narrative consistency of the simplified text, we synthesize auxiliary narrative prompts combining key phrases derived from the syntactical analyses of the original text. Our model achieves results significantly better than the seq2seq baseline on an English medical corpus, yielding 3%~4% absolute improvements in terms of lexical similarity, and providing a further 1.1% improvement of SARI score when combined with the baseline. We also highlight shortcomings of existing evaluation methods, and introduce new metrics that take into account both lexical and high-level semantic similarity. A human evaluation conducted on a random sample of the test set further establishes the effectiveness of the proposed approach. Codes and models are released here: https://github.com/LuJunru/NapSS.
Hongjing Li, Hanqi Yan, Yanran Li, Li Qian, Yulan He, Lin Gui
Recent years have witnessed increasing interests in prompt-based learning in which models can be trained on only a few annotated instances, making them suitable in low-resource settings. When using prompt-based learning for text classification, the goal is to use a pre-trained language model (PLM) to predict a missing token in a pre-defined template given an input text, which can be mapped to a class label. However, PLMs built on the transformer architecture tend to generate similar output embeddings, making it difficult to discriminate between different class labels. The problem is further exacerbated when dealing with classification tasks involving many fine-grained class labels. In this work, we alleviate this information diffusion issue, i.e., different tokens share a large proportion of similar information after going through stacked multiple self-attention layers in a transformer, by proposing a calibration method built on feature transformations through rotation and scaling to map a PLM-encoded embedding into a new metric space to guarantee the distinguishability of the resulting embeddings. Furthermore, we take the advantage of hyperbolic embeddings to capture the hierarchical relations among fine-grained class-associated token embedding by a coarse-to-fine metric learning strategy to enhance the distinguishability of the learned output embeddings. Extensive experiments on the three datasets under various settings demonstrate the effectiveness of our approach. Our code can be found at https://github.com/donttal/TARA.
Zhaoyue Sun, Gabriele Pergola, Byron C. Wallace, Yulan He
With the advent of large language models (LLMs), there has been growing interest in exploring their potential for medical applications. This research aims to investigate the ability of LLMs, specifically ChatGPT, in the context of pharmacovigilance event extraction, of which the main goal is to identify and extract adverse events or potential therapeutic events from textual medical sources. We conduct extensive experiments to assess the performance of ChatGPT in the pharmacovigilance event extraction task, employing various prompts and demonstration selection strategies. The findings demonstrate that while ChatGPT demonstrates reasonable performance with appropriate demonstration selection strategies, it still falls short compared to fully fine-tuned small models. Additionally, we explore the potential of leveraging ChatGPT for data augmentation. However, our investigation reveals that the inclusion of synthesized data into fine-tuning may lead to a decrease in performance, possibly attributed to noise in the ChatGPT-generated labels. To mitigate this, we explore different filtering strategies and find that, with the proper approach, more stable performance can be achieved, although constant improvement remains elusive.
Artem Bobrov, Domantas Saltenis, Zhaoyue Sun, Gabriele Pergola, Yulan He
Drug safety research is crucial for maintaining public health, often requiring comprehensive data support. However, the resources currently available to the public are limited and fail to provide a comprehensive understanding of the relationship between drugs and their side effects. This paper introduces DrugWatch, an easy-to-use and interactive multi-source information visualisation platform for drug safety study. It allows users to understand common side effects of drugs and their statistical information, flexibly retrieve relevant medical reports, or annotate their own medical texts with our automated annotation tool. Supported by NLP technology and enriched with interactive visual components, we are committed to providing researchers and practitioners with a one-stop information analysis, retrieval, and annotation service. The demonstration video is available at https://www.youtube.com/watch?v=RTqDgxzETjw. We also deployed an online demonstration system at https://drugwatch.net/.
Zhaoyue Sun, Jiazheng Li, Gabriele Pergola, Yulan He
Predicting unknown drug-drug interactions (DDIs) is crucial for improving medication safety. Previous efforts in DDI prediction have typically focused on binary classification or predicting DDI categories, with the absence of explanatory insights that could enhance trust in these predictions. In this work, we propose to generate natural language explanations for DDI predictions, enabling the model to reveal the underlying pharmacodynamics and pharmacokinetics mechanisms simultaneously as making the prediction. To do this, we have collected DDI explanations from DDInter and DrugBank and developed various models for extensive experiments and analysis. Our models can provide accurate explanations for unknown DDIs between known drugs. This paper contributes new tools to the field of DDI prediction and lays a solid foundation for further research on generating explanations for DDI predictions.
Junru Lu, Jiazheng Li, Siyu An, Meng Zhao, Yulan He, Di Yin, Xing Sun
Direct Preference Optimization (DPO) has emerged as a prominent algorithm for the direct and robust alignment of Large Language Models (LLMs) with human preferences, offering a more straightforward alternative to the complex Reinforcement Learning from Human Feedback (RLHF). Despite its promising efficacy, DPO faces a notable drawback: "verbosity", a common over-optimization phenomenon also observed in RLHF. While previous studies mainly attributed verbosity to biased labels within the data, we propose that the issue also stems from an inherent algorithmic length reliance in DPO. Specifically, we suggest that the discrepancy between sequence-level Kullback-Leibler (KL) divergences between chosen and rejected sequences, used in DPO, results in overestimated or underestimated rewards due to varying token lengths. Empirically, we utilize datasets with different label lengths to demonstrate the presence of biased rewards. We then introduce an effective downsampling approach, named SamPO, to eliminate potential length reliance. Our experimental evaluations, conducted across three LLMs of varying scales and a diverse array of conditional and open-ended benchmarks, highlight the efficacy of SamPO in mitigating verbosity, achieving improvements of 5% to 12% over DPO through debaised rewards. Our codes can be accessed at: https://github.com/LuJunru/SamPO/.
Linhai Zhang, Ziyang Gao, Deyu Zhou, Yulan He
Depression is a widespread mental health disorder, and clinical interviews are the gold standard for assessment. However, their reliance on scarce professionals highlights the need for automated detection. Current systems mainly employ black-box neural networks, which lack interpretability, which is crucial in mental health contexts. Some attempts to improve interpretability use post-hoc LLM generation but suffer from hallucination. To address these limitations, we propose RED, a Retrieval-augmented generation framework for Explainable depression Detection. RED retrieves evidence from clinical interview transcripts, providing explanations for predictions. Traditional query-based retrieval systems use a one-size-fits-all approach, which may not be optimal for depression detection, as user backgrounds and situations vary. We introduce a personalized query generation module that combines standard queries with user-specific background inferred by LLMs, tailoring retrieval to individual contexts. Additionally, to enhance LLM performance in social intelligence, we augment LLMs by retrieving relevant knowledge from a social intelligence datastore using an event-centric retriever. Experimental results on the real-world benchmark demonstrate RED's effectiveness compared to neural networks and LLM-based baselines.
Siya Qi, Rui Cao, Yulan He, Zheng Yuan
With the rapid development of large language models (LLMs), LLM-as-a-judge has emerged as a widely adopted approach for text quality evaluation, including hallucination evaluation. While previous studies have focused exclusively on single-context evaluation (e.g., discourse faithfulness or world factuality), real-world hallucinations typically involve mixed contexts, which remains inadequately evaluated. In this study, we use summarization as a representative task to comprehensively evaluate LLMs' capability in detecting mixed-context hallucinations, specifically distinguishing between factual and non-factual hallucinations. Through extensive experiments across direct generation and retrieval-based models of varying scales, our main observations are: (1) LLMs' intrinsic knowledge introduces inherent biases in hallucination evaluation; (2) These biases particularly impact the detection of factual hallucinations, yielding a significant performance bottleneck; (3) The fundamental challenge lies in effective knowledge utilization, balancing between LLMs' intrinsic knowledge and external context for accurate mixed-context hallucination evaluation.
Sichu Liang, Linhai Zhang, Hongyu Zhu, Wenwen Wang, Yulan He, Deyu Zhou
Medical question answering requires extensive access to specialized conceptual knowledge. The current paradigm, Retrieval-Augmented Generation (RAG), acquires expertise medical knowledge through large-scale corpus retrieval and uses this knowledge to guide a general-purpose large language model (LLM) for generating answers. However, existing retrieval approaches often overlook the importance of factual knowledge, which limits the relevance of retrieved conceptual knowledge and restricts its applicability in real-world scenarios, such as clinical decision-making based on Electronic Health Records (EHRs). This paper introduces RGAR, a recurrence generation-augmented retrieval framework that retrieves both relevant factual and conceptual knowledge from dual sources (i.e., EHRs and the corpus), allowing them to interact and refine each another. Through extensive evaluation across three factual-aware medical question answering benchmarks, RGAR establishes a new state-of-the-art performance among medical RAG systems. Notably, the Llama-3.1-8B-Instruct model with RGAR surpasses the considerably larger, RAG-enhanced GPT-3.5. Our findings demonstrate the benefit of extracting factual knowledge for retrieval, which consistently yields improved generation quality.
Jun Wang, Lixing Zhu, Abhir Bhalerao, Yulan He
Radiology report generation (RRG) methods often lack sufficient medical knowledge to produce clinically accurate reports. The scene graph contains rich information to describe the objects in an image. We explore enriching the medical knowledge for RRG via a scene graph, which has not been done in the current RRG literature. To this end, we propose the Scene Graph aided RRG (SGRRG) network, a framework that generates region-level visual features, predicts anatomical attributes, and leverages an automatically generated scene graph, thus achieving medical knowledge distillation in an end-to-end manner. SGRRG is composed of a dedicated scene graph encoder responsible for translating the scene graph, and a scene graph-aided decoder that takes advantage of both patch-level and region-level visual information. A fine-grained, sentence-level attention method is designed to better dis-till the scene graph information. Extensive experiments demonstrate that SGRRG outperforms previous state-of-the-art methods in report generation and can better capture abnormal findings.
Jun Wang, Abhir Bhalerao, Terry Yin, Simon See, Yulan He
Radiology report generation (RRG) has gained increasing research attention because of its huge potential to mitigate medical resource shortages and aid the process of disease decision making by radiologists. Recent advancements in RRG are largely driven by improving a model's capabilities in encoding single-modal feature representations, while few studies explicitly explore the cross-modal alignment between image regions and words. Radiologists typically focus first on abnormal image regions before composing the corresponding text descriptions, thus cross-modal alignment is of great importance to learn a RRG model which is aware of abnormalities in the image. Motivated by this, we propose a Class Activation Map guided Attention Network (CAMANet) which explicitly promotes crossmodal alignment by employing aggregated class activation maps to supervise cross-modal attention learning, and simultaneously enrich the discriminative information. CAMANet contains three complementary modules: a Visual Discriminative Map Generation module to generate the importance/contribution of each visual token; Visual Discriminative Map Assisted Encoder to learn the discriminative representation and enrich the discriminative information; and a Visual Textual Attention Consistency module to ensure the attention consistency between the visual and textual tokens, to achieve the cross-modal alignment. Experimental results demonstrate that CAMANet outperforms previous SOTA methods on two commonly used RRG benchmarks.
Zhanghao Hu, Hanqi Yan, Qinglin Zhu, Zhenyi Shen, Yulan He, Lin Gui
Large language models have recently pushed open domain question answering (ODQA) to new frontiers. However, prevailing retriever-reader pipelines often depend on multiple rounds of prompt level instructions, leading to high computational overhead, instability, and suboptimal retrieval coverage. In this paper, we propose EmbQA, an embedding-level framework that alleviates these shortcomings by enhancing both the retriever and the reader. Specifically, we refine query representations via lightweight linear layers under an unsupervised contrastive learning objective, thereby reordering retrieved passages to highlight those most likely to contain correct answers. Additionally, we introduce an exploratory embedding that broadens the model's latent semantic space to diversify candidate generation and employs an entropy-based selection mechanism to choose the most confident answer automatically. Extensive experiments across three open-source LLMs, three retrieval methods, and four ODQA benchmarks demonstrate that EmbQA substantially outperforms recent baselines in both accuracy and efficiency.
Sylvie Delacroix, Diana Robinson, Umang Bhatt, Jacopo Domenicucci, Jessica Montgomery, Gael Varoquaux, Carl Henrik Ek, Vincent Fortuin, Yulan He, Tom Diethe, Neill Campbell, Mennatallah El-Assady, Soren Hauberg, Ivana Dusparic, Neil Lawrence
The growing integration of large language models across professional domains transforms how experts make critical decisions in healthcare, education, and law. While significant research effort focuses on getting these systems to communicate their outputs with probabilistic measures of reliability, many consequential forms of uncertainty in professional contexts resist such quantification. A physician pondering the appropriateness of documenting possible domestic abuse, a teacher assessing cultural sensitivity, or a mathematician distinguishing procedural from conceptual understanding face forms of uncertainty that cannot be reduced to percentages. This paper argues for moving beyond simple quantification toward richer expressions of uncertainty essential for beneficial AI integration. We propose participatory refinement processes through which professional communities collectively shape how different forms of uncertainty are communicated. Our approach acknowledges that uncertainty expression is a form of professional sense-making that requires collective development rather than algorithmic optimization.
Jiazheng Li, Yuxiang Zhou, Junru Lu, Gladys Tyen, Lin Gui, Cesare Aloisi, Yulan He
Although preference optimization methods have improved reasoning performance in Large Language Models (LLMs), they often lack transparency regarding why one reasoning outcome is preferred over another. This limitation is especially critical in Automated Student Answer Scoring (ASAS), where explainability is essential to justify assessment outcomes. Verbal reinforcement learning offers the potential to generate explicit reflection, but it tends to produce superficial critiques that can harm assessment performance. Existing LLMs also struggle to reliably detect subtle reasoning errors in ASAS tasks. Moreover, manually identifying intermediate reasoning errors is expensive and difficult to scale. To address these challenges, we introduce a contrastive reflection synthesis pipeline that generates precise verbal feedback by identifying discrepancies in structure reasoning graph paths. Leveraging these synthetic reflection data, we propose DARS, a Dual-model Reflective Scoring framework featuring a dedicated Critic model trained for effective reflection. DARS achieves strong performance and consistently outperforms existing ASAS baselines across all evaluation metrics. Extensive experiments further provide novel insights into the value of reflection data, framework design, and the scaling behavior of DARS. We release the DARS code at https://github.com/lijiazheng99/DARS.