Michihiro Yasunaga, Jure Leskovec, Percy Liang
Language model (LM) pretraining can learn various knowledge from text corpora, helping downstream tasks. However, existing methods such as BERT model a single document, and do not capture dependencies or knowledge that span across documents. In this work, we propose LinkBERT, an LM pretraining method that leverages links between documents, e.g., hyperlinks. Given a text corpus, we view it as a graph of documents and create LM inputs by placing linked documents in the same context. We then pretrain the LM with two joint self-supervised objectives: masked language modeling and our new proposal, document relation prediction. We show that LinkBERT outperforms BERT on various downstream tasks across two domains: the general domain (pretrained on Wikipedia with hyperlinks) and biomedical domain (pretrained on PubMed with citation links). LinkBERT is especially effective for multi-hop reasoning and few-shot QA (+5% absolute improvement on HotpotQA and TriviaQA), and our biomedical LinkBERT sets new states of the art on various BioNLP tasks (+7% on BioASQ and USMLE). We release our pretrained models, LinkBERT and BioLinkBERT, as well as code and data at https://github.com/michiyasunaga/LinkBERT.
Yuhui Zhang, Michihiro Yasunaga, Zhengping Zhou, Jeff Z. HaoChen, James Zou, Percy Liang, Serena Yeung
Language models have been shown to exhibit positive scaling, where performance improves as models are scaled up in terms of size, compute, or data. In this work, we introduce NeQA, a dataset consisting of questions with negation in which language models do not exhibit straightforward positive scaling. We show that this task can exhibit inverse scaling, U-shaped scaling, or positive scaling, and the three scaling trends shift in this order as we use more powerful prompting methods or model families. We hypothesize that solving NeQA depends on two subtasks: question answering (task 1) and negation understanding (task 2). We find that task 1 has linear scaling, while task 2 has sigmoid-shaped scaling with an emergent transition point, and composing these two scaling trends yields the final scaling trend of NeQA. Our work reveals and provides a way to analyze the complex scaling trends of language models.
Michihiro Yasunaga, Percy Liang
We consider the problem of learning to repair programs from diagnostic feedback (e.g., compiler error messages). Program repair is challenging for two reasons: First, it requires reasoning and tracking symbols across source code and diagnostic feedback. Second, labeled datasets available for program repair are relatively small. In this work, we propose novel solutions to these two challenges. First, we introduce a program-feedback graph, which connects symbols relevant to program repair in source code and diagnostic feedback, and then apply a graph neural network on top to model the reasoning process. Second, we present a self-supervised learning paradigm for program repair that leverages unlabeled programs available online to create a large amount of extra program repair examples, which we use to pre-train our models. We evaluate our proposed approach on two applications: correcting introductory programming assignments (DeepFix dataset) and correcting the outputs of program synthesis (SPoC dataset). Our final system, DrRepair, significantly outperforms prior work, achieving 68.2% full repair rate on DeepFix (+22.9% over the prior best), and 48.4% synthesis success rate on SPoC (+3.7% over the prior best).
Kokil Jaidka, Michihiro Yasunaga, Muthu Kumar Chandrasekaran, Dragomir Radev, Min-Yen Kan
This overview describes the official results of the CL-SciSumm Shared Task 2018 -- the first medium-scale shared task on scientific document summarization in the computational linguistics (CL) domain. This year, the dataset comprised 60 annotated sets of citing and reference papers from the open access research papers in the CL domain. The Shared Task was organized as a part of the 41st Annual Conference of the Special Interest Group in Information Retrieval (SIGIR), held in Ann Arbor, USA in July 2018. We compare the participating systems in terms of two evaluation metrics. The annotated dataset and evaluation scripts can be accessed and used by the community from: \url{https://github.com/WING-NUS/scisumm-corpus}.
Michihiro Yasunaga, Jungo Kasai, Rui Zhang, Alexander R. Fabbri, Irene Li, Dan Friedman, Dragomir R. Radev
Scientific article summarization is challenging: large, annotated corpora are not available, and the summary should ideally include the article's impacts on research community. This paper provides novel solutions to these two challenges. We 1) develop and release the first large-scale manually-annotated corpus for scientific papers (on computational linguistics) by enabling faster annotation, and 2) propose summarization methods that integrate the authors' original highlights (abstract) and the article's actual impacts on the community (citations), to create comprehensive, hybrid summaries. We conduct experiments to demonstrate the efficacy of our corpus in training data-driven models for scientific paper summarization and the advantage of our hybrid summaries over abstracts and traditional citation-based summaries. Our large annotated corpus and hybrid methods provide a new framework for scientific paper summarization research.
Chandrayee Basu, Rosni Vasu, Michihiro Yasunaga, Qian Yang
Automatic medical text simplification can assist providers with patient-friendly communication and make medical texts more accessible, thereby improving health literacy. But curating a quality corpus for this task requires the supervision of medical experts. In this work, we present $\textbf{Med-EASi}$ ($\underline{\textbf{Med}}$ical dataset for $\underline{\textbf{E}}$laborative and $\underline{\textbf{A}}$bstractive $\underline{\textbf{Si}}$mplification), a uniquely crowdsourced and finely annotated dataset for supervised simplification of short medical texts. Its $\textit{expert-layman-AI collaborative}$ annotations facilitate $\textit{controllability}$ over text simplification by marking four kinds of textual transformations: elaboration, replacement, deletion, and insertion. To learn medical text simplification, we fine-tune T5-large with four different styles of input-output combinations, leading to two control-free and two controllable versions of the model. We add two types of $\textit{controllability}$ into text simplification, by using a multi-angle training approach: $\textit{position-aware}$, which uses in-place annotated inputs and outputs, and $\textit{position-agnostic}$, where the model only knows the contents to be edited, but not their positions. Our results show that our fine-grained annotations improve learning compared to the unannotated baseline. Furthermore, $\textit{position-aware}$ control generates better simplification than the $\textit{position-agnostic}$ one. The data and code are available at https://github.com/Chandrayee/CTRL-SIMP.
Michihiro Yasunaga, Armen Aghajanyan, Weijia Shi, Rich James, Jure Leskovec, Percy Liang, Mike Lewis, Luke Zettlemoyer, Wen-tau Yih
Recent multimodal models such as DALL-E and CM3 have achieved remarkable progress in text-to-image and image-to-text generation. However, these models store all learned knowledge (e.g., the appearance of the Eiffel Tower) in the model parameters, requiring increasingly larger models and training data to capture more knowledge. To integrate knowledge in a more scalable and modular way, we propose a retrieval-augmented multimodal model, which enables a base multimodal model (generator) to refer to relevant text and images fetched by a retriever from external memory (e.g., documents on the web). Specifically, for the retriever, we use a pretrained CLIP, and for the generator, we train a CM3 Transformer on the LAION dataset. Our resulting model, named Retrieval-Augmented CM3 (RA-CM3), is the first multimodal model that can retrieve and generate both text and images. We show that RA-CM3 significantly outperforms baseline multimodal models such as DALL-E and CM3 on both image and caption generation tasks (12 FID and 17 CIDEr improvements on MS-COCO), while requiring much less compute for training (<30% of DALL-E). Moreover, we show that RA-CM3 exhibits novel capabilities, such as faithful image generation and multimodal in-context learning (e.g., image generation from demonstrations).
Tao Yu, Michihiro Yasunaga, Kai Yang, Rui Zhang, Dongxu Wang, Zifan Li, Dragomir Radev
Most existing studies in text-to-SQL tasks do not require generating complex SQL queries with multiple clauses or sub-queries, and generalizing to new, unseen databases. In this paper we propose SyntaxSQLNet, a syntax tree network to address the complex and cross-domain text-to-SQL generation task. SyntaxSQLNet employs a SQL specific syntax tree-based decoder with SQL generation path history and table-aware column attention encoders. We evaluate SyntaxSQLNet on the Spider text-to-SQL task, which contains databases with multiple tables and complex SQL queries with multiple SQL clauses and nested queries. We use a database split setting where databases in the test set are unseen during training. Experimental results show that SyntaxSQLNet can handle a significantly greater number of complex SQL examples than prior work, outperforming the previous state-of-the-art model by 7.3% in exact matching accuracy. We also show that SyntaxSQLNet can further improve the performance by an additional 7.5% using a cross-domain augmentation method, resulting in a 14.8% improvement in total. To our knowledge, we are the first to study this complex and cross-domain text-to-SQL task.
Tao Yu, Rui Zhang, Kai Yang, Michihiro Yasunaga, Dongxu Wang, Zifan Li, James Ma, Irene Li, Qingning Yao, Shanelle Roman, Zilin Zhang, Dragomir Radev
We present Spider, a large-scale, complex and cross-domain semantic parsing and text-to-SQL dataset annotated by 11 college students. It consists of 10,181 questions and 5,693 unique complex SQL queries on 200 databases with multiple tables, covering 138 different domains. We define a new complex and cross-domain semantic parsing and text-to-SQL task where different complex SQL queries and databases appear in train and test sets. In this way, the task requires the model to generalize well to both new SQL queries and new database schemas. Spider is distinct from most of the previous semantic parsing tasks because they all use a single database and the exact same programs in the train set and the test set. We experiment with various state-of-the-art models and the best model achieves only 12.4% exact matching accuracy on a database split setting. This shows that Spider presents a strong challenge for future research. Our dataset and task are publicly available at https://yale-lily.github.io/spider
Michihiro Yasunaga, Hongyu Ren, Antoine Bosselut, Percy Liang, Jure Leskovec
The problem of answering questions using knowledge from pre-trained language models (LMs) and knowledge graphs (KGs) presents two challenges: given a QA context (question and answer choice), methods need to (i) identify relevant knowledge from large KGs, and (ii) perform joint reasoning over the QA context and KG. In this work, we propose a new model, QA-GNN, which addresses the above challenges through two key innovations: (i) relevance scoring, where we use LMs to estimate the importance of KG nodes relative to the given QA context, and (ii) joint reasoning, where we connect the QA context and KG to form a joint graph, and mutually update their representations through graph neural networks. We evaluate our model on QA benchmarks in the commonsense (CommonsenseQA, OpenBookQA) and biomedical (MedQA-USMLE) domains. QA-GNN outperforms existing LM and LM+KG models, and exhibits capabilities to perform interpretable and structured reasoning, e.g., correctly handling negation in questions.
Tony Lee, Michihiro Yasunaga, Chenlin Meng, Yifan Mai, Joon Sung Park, Agrim Gupta, Yunzhi Zhang, Deepak Narayanan, Hannah Benita Teufel, Marco Bellagente, Minguk Kang, Taesung Park, Jure Leskovec, Jun-Yan Zhu, Li Fei-Fei, Jiajun Wu, Stefano Ermon, Percy Liang
The stunning qualitative improvement of recent text-to-image models has led to their widespread attention and adoption. However, we lack a comprehensive quantitative understanding of their capabilities and risks. To fill this gap, we introduce a new benchmark, Holistic Evaluation of Text-to-Image Models (HEIM). Whereas previous evaluations focus mostly on text-image alignment and image quality, we identify 12 aspects, including text-image alignment, image quality, aesthetics, originality, reasoning, knowledge, bias, toxicity, fairness, robustness, multilinguality, and efficiency. We curate 62 scenarios encompassing these aspects and evaluate 26 state-of-the-art text-to-image models on this benchmark. Our results reveal that no single model excels in all aspects, with different models demonstrating different strengths. We release the generated images and human evaluation results for full transparency at https://crfm.stanford.edu/heim/v1.1.0 and the code at https://github.com/stanford-crfm/helm, which is integrated with the HELM codebase.
Michihiro Yasunaga, John Lafferty
Scientific documents rely on both mathematics and text to communicate ideas. Inspired by the topical correspondence between mathematical equations and word contexts observed in scientific texts, we propose a novel topic model that jointly generates mathematical equations and their surrounding text (TopicEq). Using an extension of the correlated topic model, the context is generated from a mixture of latent topics, and the equation is generated by an RNN that depends on the latent topic activations. To experiment with this model, we create a corpus of 400K equation-context pairs extracted from a range of scientific articles from arXiv, and fit the model using a variational autoencoder approach. Experimental results show that this joint model significantly outperforms existing topic models and equation models for scientific texts. Moreover, we qualitatively show that the model effectively captures the relationship between topics and mathematics, enabling novel applications such as topic-aware equation generation, equation topic inference, and topic-aware alignment of mathematical symbols and words.
Michihiro Yasunaga, Xinyun Chen, Yujia Li, Panupong Pasupat, Jure Leskovec, Percy Liang, Ed H. Chi, Denny Zhou
Chain-of-thought (CoT) prompting for language models demonstrates impressive performance across reasoning tasks, but typically needs labeled exemplars of the reasoning process. In this work, we introduce a new prompting approach, analogical prompting, designed to automatically guide the reasoning process of large language models. Inspired by analogical reasoning, a cognitive process in which humans draw from relevant past experiences to tackle new problems, our approach prompts language models to self-generate relevant exemplars or knowledge in the context, before proceeding to solve the given problem. This method presents several advantages: it obviates the need for labeling or retrieving exemplars, offering generality and convenience; it can also tailor the generated exemplars and knowledge to each problem, offering adaptability. Experimental results show that our approach outperforms 0-shot CoT and manual few-shot CoT in a variety of reasoning tasks, including math problem solving in GSM8K and MATH, code generation in Codeforces, and other reasoning tasks in BIG-Bench.
Michihiro Yasunaga, Antoine Bosselut, Hongyu Ren, Xikun Zhang, Christopher D Manning, Percy Liang, Jure Leskovec
Pretraining a language model (LM) on text has been shown to help various downstream NLP tasks. Recent works show that a knowledge graph (KG) can complement text data, offering structured background knowledge that provides a useful scaffold for reasoning. However, these works are not pretrained to learn a deep fusion of the two modalities at scale, limiting the potential to acquire fully joint representations of text and KG. Here we propose DRAGON (Deep Bidirectional Language-Knowledge Graph Pretraining), a self-supervised approach to pretraining a deeply joint language-knowledge foundation model from text and KG at scale. Specifically, our model takes pairs of text segments and relevant KG subgraphs as input and bidirectionally fuses information from both modalities. We pretrain this model by unifying two self-supervised reasoning tasks, masked language modeling and KG link prediction. DRAGON outperforms existing LM and LM+KG models on diverse downstream tasks including question answering across general and biomedical domains, with +5% absolute gain on average. In particular, DRAGON achieves notable performance on complex reasoning about language and knowledge (+10% on questions involving long contexts or multi-step reasoning) and low-resource QA (+8% on OBQA and RiddleSense), and new state-of-the-art results on various BioNLP tasks. Our code and trained models are available at https://github.com/michiyasunaga/dragon.
Tao Yu, Rui Zhang, Michihiro Yasunaga, Yi Chern Tan, Xi Victoria Lin, Suyi Li, Heyang Er, Irene Li, Bo Pang, Tao Chen, Emily Ji, Shreya Dixit, David Proctor, Sungrok Shim, Jonathan Kraft, Vincent Zhang, Caiming Xiong, Richard Socher, Dragomir Radev
We present SParC, a dataset for cross-domainSemanticParsing inContext that consists of 4,298 coherent question sequences (12k+ individual questions annotated with SQL queries). It is obtained from controlled user interactions with 200 complex databases over 138 domains. We provide an in-depth analysis of SParC and show that it introduces new challenges compared to existing datasets. SParC demonstrates complex contextual dependencies, (2) has greater semantic diversity, and (3) requires generalization to unseen domains due to its cross-domain nature and the unseen databases at test time. We experiment with two state-of-the-art text-to-SQL models adapted to the context-dependent, cross-domain setup. The best model obtains an exact match accuracy of 20.2% over all questions and less than10% over all interaction sequences, indicating that the cross-domain setting and the con-textual phenomena of the dataset present significant challenges for future research. The dataset, baselines, and leaderboard are released at https://yale-lily.github.io/sparc.
Michihiro Yasunaga, Jure Leskovec, Percy Liang
Training a model for grammatical error correction (GEC) requires a set of labeled ungrammatical / grammatical sentence pairs, but manually annotating such pairs can be expensive. Recently, the Break-It-Fix-It (BIFI) framework has demonstrated strong results on learning to repair a broken program without any labeled examples, but this relies on a perfect critic (e.g., a compiler) that returns whether an example is valid or not, which does not exist for the GEC task. In this work, we show how to leverage a pretrained language model (LM) in defining an LM-Critic, which judges a sentence to be grammatical if the LM assigns it a higher probability than its local perturbations. We apply this LM-Critic and BIFI along with a large set of unlabeled sentences to bootstrap realistic ungrammatical / grammatical pairs for training a corrector. We evaluate our approach on GEC datasets across multiple domains (CoNLL-2014, BEA-2019, GMEG-wiki and GMEG-yahoo) and show that it outperforms existing methods in both the unsupervised setting (+7.7 F0.5) and the supervised setting (+0.5 F0.5).
Michihiro Yasunaga, Percy Liang
We consider repair tasks: given a critic (e.g., compiler) that assesses the quality of an input, the goal is to train a fixer that converts a bad example (e.g., code with syntax errors) into a good one (e.g., code with no syntax errors). Existing works create training data consisting of (bad, good) pairs by corrupting good examples using heuristics (e.g., dropping tokens). However, fixers trained on this synthetically-generated data do not extrapolate well to the real distribution of bad inputs. To bridge this gap, we propose a new training approach, Break-It-Fix-It (BIFI), which has two key ideas: (i) we use the critic to check a fixer's output on real bad inputs and add good (fixed) outputs to the training data, and (ii) we train a breaker to generate realistic bad code from good code. Based on these ideas, we iteratively update the breaker and the fixer while using them in conjunction to generate more paired data. We evaluate BIFI on two code repair datasets: GitHub-Python, a new dataset we introduce where the goal is to repair Python code with AST parse errors; and DeepFix, where the goal is to repair C code with compiler errors. BIFI outperforms existing methods, obtaining 90.5% repair accuracy on GitHub-Python (+28.5%) and 71.7% on DeepFix (+5.6%). Notably, BIFI does not require any labeled data; we hope it will be a strong starting point for unsupervised learning of various repair tasks.
Michihiro Yasunaga, Leonid Shamis, Chunting Zhou, Andrew Cohen, Jason Weston, Luke Zettlemoyer, Marjan Ghazvininejad
Recent approaches to large language model (LLM) alignment typically require millions of human annotations or rely on external aligned models for synthetic data generation. This paper introduces ALMA: Alignment with Minimal Annotation, demonstrating that effective alignment can be achieved using only 9,000 labeled examples -- less than 1% of conventional approaches. ALMA generates large amounts of high-quality synthetic alignment data through new techniques: diverse prompt synthesis via few-shot learning, diverse response generation with multiple model checkpoints, and judge (reward model) enhancement through score aggregation and self-distillation. Using only a pretrained Llama3 base model, 5,000 SFT examples, and 4,000 judge annotations, ALMA achieves performance close to Llama3-Instruct across diverse alignment benchmarks (e.g., 0.1% difference on AlpacaEval 2.0 score). These results are achieved with a multi-round, self-bootstrapped data synthesis and training recipe that continues to improve for 10 rounds, surpassing the typical 3-round ceiling of previous methods. These results suggest that base models already possess sufficient knowledge for effective alignment, and that synthetic data generation methods can expose it.
Michihiro Yasunaga, Luke Zettlemoyer, Marjan Ghazvininejad
Reward models play an essential role in training vision-language models (VLMs) by assessing output quality to enable aligning with human preferences. Despite their importance, the research community lacks comprehensive open benchmarks for evaluating multimodal reward models in VLMs. To address this gap, we introduce Multimodal RewardBench, an expert-annotated benchmark covering six domains: general correctness, preference, knowledge, reasoning, safety, and visual question-answering. Our dataset comprises 5,211 annotated (prompt, chosen response, rejected response) triplets collected from various VLMs. In evaluating a range of VLM judges, we find that even the top-performing models, Gemini 1.5 Pro and Claude 3.5 Sonnet, achieve only 72% overall accuracy. Notably, most models struggle in the reasoning and safety domains. These findings suggest that Multimodal RewardBench offers a challenging testbed for advancing reward model development across multiple domains. We release the benchmark at https://github.com/facebookresearch/multimodal_rewardbench.
Muthu Kumar Chandrasekaran, Michihiro Yasunaga, Dragomir Radev, Dayne Freitag, Min-Yen Kan
The CL-SciSumm Shared Task is the first medium-scale shared task on scientific document summarization in the computational linguistics~(CL) domain. In 2019, it comprised three tasks: (1A) identifying relationships between citing documents and the referred document, (1B) classifying the discourse facets, and (2) generating the abstractive summary. The dataset comprised 40 annotated sets of citing and reference papers of the CL-SciSumm 2018 corpus and 1000 more from the SciSummNet dataset. All papers are from the open access research papers in the CL domain. This overview describes the participation and the official results of the CL-SciSumm 2019 Shared Task, organized as a part of the 42nd Annual Conference of the Special Interest Group in Information Retrieval (SIGIR), held in Paris, France in July 2019. We compare the participating systems in terms of two evaluation metrics and discuss the use of ROUGE as an evaluation metric. The annotated dataset used for this shared task and the scripts used for evaluation can be accessed and used by the community at: https://github.com/WING-NUS/scisumm-corpus.