Speeding protein folding beyond the Gō model: How a little frustration sometimes helps

By perturbing a Gō model toward a realistic protein Hamiltonian by adding non‐native interactions, we find that the folding rate is in general enhanced as ruggedness is initially increased, as long as the protein is sufficiently large and flexible. Eventually, the rate drops rapidly toward zero when ruggedness significantly slows conformational transitions. Energy landscape arguments for thermodynamics and kinetics are coupled with a treatment of non‐native collapse to elucidate this effect. Proteins 2001;45:337–345. © 2001 Wiley‐Liss, Inc.